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Chimeric RNA

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Cover of 'Chimeric RNA'

Table of Contents

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    Book Overview
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    Chapter 1 Prediction, Characterization, and In Silico Validation of Chimeric RNAs
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    Chapter 2 Identification of Fusion Transcripts from Unaligned RNA-Seq Reads Using ChimeRScope
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    Chapter 3 Identification of Chimeric RNAs Using RNA-Seq Reads and Protein–Protein Interactions of Translated Chimeras
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    Chapter 4 Gene Fusion Discovery with INTEGRATE
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    Chapter 5 Case Study: Systematic Detection and Prioritization of Gene Fusions in Cancer by RNA-Seq: A DIY Toolkit
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    Chapter 6 Detection and Measurement of Chimeric RNAs by RT-PCR
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    Chapter 7 Detection of Group II Intron-Generated Chimeric mRNAs in Bacterial Cells
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    Chapter 8 RNase Protection Assay
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    Chapter 9 Validation of Chimeric Fusion Peptides Using Proteomics Data
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    Chapter 10 NanoString nCounter Technology: High-Throughput RNA Validation
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    Chapter 11 Knockdown of Chimeric RNA by RNAi
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    Chapter 12 Overexpression of Chimeric RNA by Retroviral Transduction
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    Chapter 13 Separation of Nuclear and Cytoplasmic Fractions for Chimeric RNA Characterization
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    Chapter 14 Confirmation of Transcriptional Read-Through Events by RT-PCR
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    Chapter 15 Validating Gene Fusion as the Source of Chimeric RNAs
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    Chapter 16 Chimeric RNA and Exosomes-Based Liquid Biopsy
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    Chapter 17 SMaRT for Therapeutic Purposes
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    Chapter 18 Case Study: Landscape of Chimeric RNAs in Bladder Cancer
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    Chapter 19 Case Study: The Recurrent Fusion RNA DUS4L-BCAP29 in Noncancer Human Tissues and Cells
Attention for Chapter 5: Case Study: Systematic Detection and Prioritization of Gene Fusions in Cancer by RNA-Seq: A DIY Toolkit
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Chapter title
Case Study: Systematic Detection and Prioritization of Gene Fusions in Cancer by RNA-Seq: A DIY Toolkit
Chapter number 5
Book title
Chimeric RNA
Published by
Humana, New York, NY, November 2019
DOI 10.1007/978-1-4939-9904-0_5
Pubmed ID
Book ISBNs
978-1-4939-9903-3, 978-1-4939-9904-0
Authors

Pankaj Vats, Arul M. Chinnaiyan, Chandan Kumar-Sinha

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